Utopia is a collection of interactive tools for analysing protein sequence and structure. Up front are user-friendly and responsive visualisation applications, behind the scenes a sophisticated model that allows these to work together and hides much of the tedious work of dealing with file formats and web services.
The installation package (provided by the AdvancedInterfacesGroup AIG) includes
- CINEMA – multiple sequence alignment editor
- Ambrosia – molecular structure viewer
- UTOPIA – support libraries and plugins
After a quick & painless installation, it seems to work out of the box. More in-depth info when I get to grips with more of the functionality.